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itkPCAMetric2.h
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1 /*=========================================================================
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3  * Copyright UMC Utrecht and contributors
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5  * Licensed under the Apache License, Version 2.0 (the "License");
6  * you may not use this file except in compliance with the License.
7  * You may obtain a copy of the License at
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12  * distributed under the License is distributed on an "AS IS" BASIS,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the License for the specific language governing permissions and
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17  *=========================================================================*/
18 #ifndef __itkPCAMetric2_H__
19 #define __itkPCAMetric2_H__
20 
22 
23 #include "itkSmoothingRecursiveGaussianImageFilter.h"
25 #include "itkNearestNeighborInterpolateImageFunction.h"
26 #include "itkExtractImageFilter.h"
27 
28 namespace itk
29 {
30 template< class TFixedImage, class TMovingImage >
31 class PCAMetric2 :
32  public AdvancedImageToImageMetric< TFixedImage, TMovingImage >
33 {
34 public:
35 
37  typedef PCAMetric2 Self;
39  TFixedImage, TMovingImage > Superclass;
40  typedef SmartPointer< Self > Pointer;
41  typedef SmartPointer< const Self > ConstPointer;
42 
44  typedef typename FixedImageRegionType::SizeType FixedImageSizeType;
45 
47  itkNewMacro( Self );
48 
51 
53  itkSetMacro( NumAdditionalSamplesFixed, unsigned int );
54  itkSetMacro( ReducedDimensionIndex, unsigned int );
55  itkSetMacro( SubtractMean, bool );
56  itkSetMacro( GridSize, FixedImageSizeType );
57  itkSetMacro( TransformIsStackTransform, bool );
58 
60  typedef typename
75  typedef typename Superclass::RealType RealType;
93  typedef typename
97  typedef typename
99  typedef typename
101  typedef typename
103 
105  itkStaticConstMacro( FixedImageDimension, unsigned int,
106  FixedImageType::ImageDimension );
107 
109  itkStaticConstMacro( MovingImageDimension, unsigned int,
110  MovingImageType::ImageDimension );
111 
113  MeasureType GetValue( const TransformParametersType & parameters ) const override;
114 
116  void GetDerivative( const TransformParametersType & parameters,
117  DerivativeType & derivative ) const override;
118 
121  MeasureType & Value, DerivativeType & Derivative ) const override;
122 
127  void Initialize( void ) override;
128 
129 protected:
130 
132  ~PCAMetric2() override {}
133  void PrintSelf( std::ostream & os, Indent indent ) const override;
134 
142  typedef typename itk::ContinuousIndex< CoordinateRepresentationType, FixedImageDimension >
150 
156  const TransformJacobianType & jacobian,
157  const MovingImageDerivativeType & movingImageDerivative,
158  DerivativeType & imageJacobian ) const override;
159 
160 private:
161 
162  PCAMetric2( const Self & ); // purposely not implemented
163  void operator=( const Self & ); // purposely not implemented
164 
166  void SampleRandom( const int n, const int m, std::vector< int > & numbers ) const;
167 
171 
174 
177 
180 
181 };
182 
183 } // end namespace itk
184 
185 #ifndef ITK_MANUAL_INSTANTIATION
186 #include "itkPCAMetric2.hxx"
187 #endif
188 
189 #endif // end #ifndef __itkPCAMetric2_H__
An extension of the ITK ImageToImageMetric. It is the intended base class for all elastix metrics.
BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double > BSplineInterpolatorType
Superclass::FixedImageConstPointer FixedImageConstPointer
Superclass::TransformParametersType TransformParametersType
Superclass::MovingImageConstPointer MovingImageConstPointer
Superclass::FixedImageMaskPointer FixedImageMaskPointer
InterpolatorType::ContinuousIndexType MovingImageContinuousIndexType
Superclass::GradientImageFilterPointer GradientImageFilterPointer
Superclass::GradientImageFilterType GradientImageFilterType
Superclass::TransformJacobianType TransformJacobianType
FixedArray< double, Self::MovingImageDimension > MovingImageDerivativeScalesType
Superclass::GradientImagePointer GradientImagePointer
Superclass::TransformPointer TransformPointer
ImageSamplerType::OutputVectorContainerPointer ImageSampleContainerPointer
AdvancedTransformType::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
ImageSamplerBase< FixedImageType > ImageSamplerType
Superclass::CoordinateRepresentationType CoordinateRepresentationType
ImageSamplerType::OutputVectorContainerType ImageSampleContainerType
Superclass::InterpolatorPointer InterpolatorPointer
Superclass::MovingImageMaskPointer MovingImageMaskPointer
TransformType::InputPointType FixedImagePointType
Superclass::MovingImageMaskType MovingImageMaskType
Superclass::GradientPixelType GradientPixelType
MovingImageType::IndexType MovingImageIndexType
MovingImageType::RegionType MovingImageRegionType
FixedImageLimiterType::OutputType FixedImageLimiterOutputType
FixedImageIndexType::IndexValueType FixedImageIndexValueType
Superclass::MovingImagePixelType MovingImagePixelType
MovingImageLimiterType::OutputType MovingImageLimiterOutputType
GradientImageFilter< MovingImageType, RealType, RealType > CentralDifferenceGradientFilterType
LimiterFunctionBase< RealType, MovingImageDimension > MovingImageLimiterType
BSplineInterpolatorType::CovariantVectorType MovingImageDerivativeType
Superclass::FixedImageMaskType FixedImageMaskType
Superclass::GradientImageType GradientImageType
Superclass::InterpolatorType InterpolatorType
TransformType::OutputPointType MovingImagePointType
LimiterFunctionBase< RealType, FixedImageDimension > FixedImageLimiterType
Superclass::FixedImageRegionType FixedImageRegionType
Superclass::FixedImageIndexValueType FixedImageIndexValueType
MeasureType GetValue(const TransformParametersType &parameters) const override
~PCAMetric2() override
Superclass::TransformJacobianType TransformJacobianType
Definition: itkPCAMetric2.h:72
void Initialize(void) override
Superclass::FixedImageLimiterOutputType FixedImageLimiterOutputType
Definition: itkPCAMetric2.h:98
Superclass::TransformParametersType TransformParametersType
Definition: itkPCAMetric2.h:71
Superclass::ImageSamplerType ImageSamplerType
Definition: itkPCAMetric2.h:90
PCAMetric2(const Self &)
Superclass::TransformType TransformType
Definition: itkPCAMetric2.h:67
itkStaticConstMacro(FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
Superclass::InterpolatorPointer InterpolatorPointer
Definition: itkPCAMetric2.h:74
FixedImageSizeType m_GridSize
Superclass::CoordinateRepresentationType CoordinateRepresentationType
Definition: itkPCAMetric2.h:57
Superclass::ImageSamplerPointer ImageSamplerPointer
Definition: itkPCAMetric2.h:91
Superclass::FixedImageMaskPointer FixedImageMaskPointer
Definition: itkPCAMetric2.h:82
Superclass::OutputPointType OutputPointType
Definition: itkPCAMetric2.h:70
Superclass::MovingImageDerivativeType MovingImageDerivativeType
Superclass::TransformPointer TransformPointer
Definition: itkPCAMetric2.h:68
unsigned int m_NumAdditionalSamplesFixed
void PrintSelf(std::ostream &os, Indent indent) const override
void GetValueAndDerivative(const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
Superclass::DerivativeType DerivativeType
Definition: itkPCAMetric2.h:86
Superclass::MovingImageMaskType MovingImageMaskType
Definition: itkPCAMetric2.h:83
Superclass::FixedImagePixelType FixedImagePixelType
Definition: itkPCAMetric2.h:88
Superclass::MovingImageLimiterType MovingImageLimiterType
Definition: itkPCAMetric2.h:96
Superclass::FixedImageLimiterType FixedImageLimiterType
Definition: itkPCAMetric2.h:95
Superclass::CentralDifferenceGradientFilterType CentralDifferenceGradientFilterType
Superclass::MovingImageType MovingImageType
Definition: itkPCAMetric2.h:62
void SampleRandom(const int n, const int m, std::vector< int > &numbers) const
AdvancedImageToImageMetric< TFixedImage, TMovingImage > Superclass
Definition: itkPCAMetric2.h:39
Superclass::MovingImageRegionType MovingImageRegionType
Definition: itkPCAMetric2.h:89
Superclass::MovingImageDerivativeScalesType MovingImageDerivativeScalesType
Superclass::GradientImageFilterType GradientImageFilterType
Definition: itkPCAMetric2.h:79
Superclass::FixedImageIndexType FixedImageIndexType
itkStaticConstMacro(MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
Superclass::ImageSampleContainerType ImageSampleContainerType
Definition: itkPCAMetric2.h:92
Superclass::GradientImageFilterPointer GradientImageFilterPointer
Definition: itkPCAMetric2.h:80
bool m_TransformIsStackTransform
Superclass::MovingImagePixelType MovingImagePixelType
Definition: itkPCAMetric2.h:63
Superclass::MeasureType MeasureType
Definition: itkPCAMetric2.h:85
unsigned int m_ReducedDimensionIndex
Superclass::MovingImageMaskPointer MovingImageMaskPointer
Definition: itkPCAMetric2.h:84
Superclass::InputPointType InputPointType
Definition: itkPCAMetric2.h:69
Superclass::MovingImagePointType MovingImagePointType
Superclass::InterpolatorType InterpolatorType
Definition: itkPCAMetric2.h:73
Superclass::MovingImageContinuousIndexType MovingImageContinuousIndexType
PCAMetric2 Self
Definition: itkPCAMetric2.h:37
void operator=(const Self &)
Superclass::GradientImagePointer GradientImagePointer
Definition: itkPCAMetric2.h:78
Superclass::MovingImageLimiterOutputType MovingImageLimiterOutputType
Superclass::MovingImageIndexType MovingImageIndexType
Superclass::FixedImageType FixedImageType
Definition: itkPCAMetric2.h:65
Superclass::FixedImageConstPointer FixedImageConstPointer
Definition: itkPCAMetric2.h:66
Superclass::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
Superclass::GradientPixelType GradientPixelType
Definition: itkPCAMetric2.h:76
Superclass::ImageSampleContainerPointer ImageSampleContainerPointer
Definition: itkPCAMetric2.h:94
SmartPointer< const Self > ConstPointer
Definition: itkPCAMetric2.h:41
Superclass::BSplineInterpolatorType BSplineInterpolatorType
FixedImageRegionType::SizeType FixedImageSizeType
Definition: itkPCAMetric2.h:44
Superclass::MovingImageConstPointer MovingImageConstPointer
Definition: itkPCAMetric2.h:64
void GetDerivative(const TransformParametersType &parameters, DerivativeType &derivative) const override
void EvaluateTransformJacobianInnerProduct(const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const override
Superclass::RealType RealType
Definition: itkPCAMetric2.h:75
itk::ContinuousIndex< CoordinateRepresentationType, FixedImageDimension > FixedImageContinuousIndexType
Superclass::FixedImageRegionType FixedImageRegionType
Definition: itkPCAMetric2.h:43
Superclass::FixedImageMaskType FixedImageMaskType
Definition: itkPCAMetric2.h:81
Superclass::GradientImageType GradientImageType
Definition: itkPCAMetric2.h:77
Superclass::FixedImagePointType FixedImagePointType
Superclass::ParametersType ParametersType
Definition: itkPCAMetric2.h:87
SmartPointer< Self > Pointer
Definition: itkPCAMetric2.h:40


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