Class SpartanSmolReader

  • All Implemented Interfaces:
    javajs.api.GenericLineReader

    public class SpartanSmolReader
    extends SpartanInputReader
    • Field Detail

      • iHaveModelStatement

        private boolean iHaveModelStatement
      • isCompoundDocument

        private boolean isCompoundDocument
      • inputOnly

        private boolean inputOnly
      • espCharges

        private boolean espCharges
      • natCharges

        private boolean natCharges
      • isInputFirst

        private boolean isInputFirst
      • iHaveNewDir

        private boolean iHaveNewDir
      • title

        private java.lang.String title
      • titles

        java.util.Map<java.lang.String,​java.lang.String> titles
      • haveCharges

        private boolean haveCharges
    • Constructor Detail

      • SpartanSmolReader

        public SpartanSmolReader()
    • Method Detail

      • checkLine

        protected boolean checkLine()
                             throws java.lang.Exception
        Overrides:
        checkLine in class AtomSetCollectionReader
        Returns:
        true if need to read new line
        Throws:
        java.lang.Exception
      • makeNewAtomSet

        private void makeNewAtomSet()
      • readMyTransform

        private void readMyTransform()
                              throws java.lang.Exception
        Throws:
        java.lang.Exception
      • readOutput

        private void readOutput()
                         throws java.lang.Exception
        Throws:
        java.lang.Exception
      • readArchive

        private java.lang.String readArchive()
                                      throws java.lang.Exception
        Throws:
        java.lang.Exception
      • setCharges

        private void setCharges()
      • readProperties

        private void readProperties()
                             throws java.lang.Exception
        Throws:
        java.lang.Exception
      • readArchiveHeader

        private java.lang.String readArchiveHeader()
                                            throws java.lang.Exception
        Throws:
        java.lang.Exception
      • setEnergy

        public void setEnergy​(float value)