nipype.interfaces.slicer.quantification.changequantification module¶
Autogenerated file - DO NOT EDIT If you spot a bug, please report it on the mailing list and/or change the generator.
IntensityDifferenceMetric¶
Bases: SEMLikeCommandLine
Wrapped executable:
IntensityDifferenceMetric
.
- title:
Intensity Difference Change Detection (FAST)
- category:
Quantification.ChangeQuantification
- description:
Quantifies the changes between two spatially aligned images based on the pixel-wise difference of image intensities.
version: 0.1
contributor: Andrey Fedorov
acknowledgements:
- argsa string
Additional parameters to the command. Maps to a command-line argument:
%s
.- baselineSegmentationVolumea pathlike object or string representing an existing file
Label volume that contains segmentation of the structure of interest in the baseline volume. Maps to a command-line argument:
%s
(position: -3).- baselineVolumea pathlike object or string representing an existing file
Baseline volume to be compared to. Maps to a command-line argument:
%s
(position: -4).- changingBandSizean integer
How far (in mm) from the boundary of the segmentation should the intensity changes be considered. Maps to a command-line argument:
--changingBandSize %d
.- environa dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’
Environment variables. (Nipype default value:
{}
)- followupVolumea pathlike object or string representing an existing file
Followup volume to be compare to the baseline. Maps to a command-line argument:
%s
(position: -2).- outputVolumea boolean or a pathlike object or string representing a file
Output volume to keep the results of change quantification. Maps to a command-line argument:
%s
(position: -1).- reportFileNamea boolean or a pathlike object or string representing a file
Report file name. Maps to a command-line argument:
--reportFileName %s
.- sensitivityThresholda float
This parameter should be between 0 and 1, and defines how sensitive the metric should be to the intensity changes. Maps to a command-line argument:
--sensitivityThreshold %f
.
- outputVolumea pathlike object or string representing an existing file
Output volume to keep the results of change quantification.
- reportFileNamea pathlike object or string representing an existing file
Report file name.